Update NN tools

ZeroLevel.HNSW/Model/Histogram.cs

@@ -211,65 +211,68 @@ For I=Maxes[0] to Maxes[1]
 
         public int CuttOff()
         {
-            var grad = new int[Values.Length];
-            grad[0] = 0;
-            grad[1] = 0;
-            for (int k = 2; k < Values.Length; k++)
+            if (Values.Length > 1)
             {
-                grad[k - 1] = Values[k] - Values[k - 1];
-            }
-            var modes = 0;
-            var window = 0;
-            var sign = 1;
-            var sum = 0;
-            var max = 0;
-            var maxInd = 0;
-            var maxes = new List<int>();
-            do
-            {
-                maxes.Clear();
-                window++;
-                modes = 0;
-                sum = 0;
-                for (int i = 0; i < grad.Length; i += window)
+                var grad = new int[Values.Length];
+                grad[0] = 0;
+                grad[1] = 0;
+                for (int k = 2; k < Values.Length; k++)
+                {
+                    grad[k - 1] = Values[k] - Values[k - 1];
+                }
+                var modes = 0;
+                var window = 0;
+                var sign = 1;
+                var sum = 0;
+                var max = 0;
+                var maxInd = 0;
+                var maxes = new List<int>();
+                do
                 {
-                    sum = grad[i];
-                    max = Values[i];
-                    maxInd = i;
-                    for (var w = 1; w < window && (i + w) < grad.Length; w++)
+                    maxes.Clear();
+                    window++;
+                    modes = 0;
+                    sum = 0;
+                    for (int i = 0; i < grad.Length; i += window)
                     {
-                        sum += grad[i + w];
-                        if (Values[i + w] > max)
+                        sum = grad[i];
+                        max = Values[i];
+                        maxInd = i;
+                        for (var w = 1; w < window && (i + w) < grad.Length; w++)
                         {
-                            max = Values[i + w];
-                            maxInd = i + w;
+                            sum += grad[i + w];
+                            if (Values[i + w] > max)
+                            {
+                                max = Values[i + w];
+                                maxInd = i + w;
+                            }
+                        }
+                        if (sum > 0 && sign < 0)
+                        {
+                            sign = 1;
+                        }
+                        else if (sum < 0 && sign > 0)
+                        {
+                            modes++;
+                            maxes.Add(maxInd);
+                            sign = -1;
                         }
                     }
-                    if (sum > 0 && sign < 0)
-                    {
-                        sign = 1;
-                    }
-                    else if (sum < 0 && sign > 0)
-                    {
-                        modes++;
-                        maxes.Add(maxInd);
-                        sign = -1;
-                    }
-                }
-            } while (modes > 2);
-            if (modes == 2)
-            {
-                var cutoff = maxes[0];
-                var min = Values[cutoff];
-                for (int i = maxes[0] + 1; i < maxes[1]; i++)
+                } while (modes > 2);
+                if (modes == 2)
                 {
-                    if (Values[i] < min)
+                    var cutoff = maxes[0];
+                    var min = Values[cutoff];
+                    for (int i = maxes[0] + 1; i < maxes[1]; i++)
                     {
-                        cutoff = i;
-                        min = Values[i];
+                        if (Values[i] < min)
+                        {
+                            cutoff = i;
+                            min = Values[i];
+                        }
                     }
+                    return cutoff;
                 }
-                return cutoff;
             }
             return -1;
         }

ZeroLevel.HNSW/Model/NSWOptions.cs

@@ -5,7 +5,7 @@ namespace ZeroLevel.HNSW
     public sealed class NSWOptions<TItem>
     {
         /// <summary>
-        /// Mox node connections on Layer
+        /// Max node connections on Layer
         /// </summary>
         public readonly int M;
         /// <summary>

ZeroLevel.HNSW/Services/LinksSet.cs

@@ -81,10 +81,10 @@ namespace ZeroLevel.HNSW
         }
         public void Deserialize(IBinaryReader reader)
         {
-            if (reader.ReadBoolean() != false)
+            /*if (reader.ReadBoolean() != false)
             {
                 throw new InvalidOperationException("Incompatible format");
-            }
+            }*/
             _set.Clear();
             _set = null;
             var count = reader.ReadInt32();

ZeroLevel.HNSW/Utils/VisitedBitSet.cs

@@ -2,29 +2,29 @@
 
 namespace ZeroLevel.HNSW
 {
-    internal class VisitedBitSet
+    public class VisitedBitSet
     {
         // bit map
         private int[] Buffer;
 
-        internal VisitedBitSet(int nodesCount, int M)
+        public VisitedBitSet(int nodesCount, int M)
         {
             Buffer = new int[(nodesCount >> 5) + M + 1];
         }
 
-        internal bool Contains(int nodeId)
+        public bool Contains(int nodeId)
         {
             int carrier = Buffer[nodeId >> 5];
             return ((1 << (nodeId & 31)) & carrier) != 0;
         }
 
-        internal void Add(int nodeId)
+        public void Add(int nodeId)
         {
             int mask = 1 << (nodeId & 31);
             Buffer[nodeId >> 5] |= mask;
         }
 
-        internal void Clear()
+        public void Clear()
         {
             Array.Clear(Buffer, 0, Buffer.Length);
         }

ZeroLevel.NN/Architectures/Yolo5.cs

@@ -0,0 +1,17 @@
+namespace ZeroLevel.NN.Architectures
+{
+    internal class Yolo5
+        : SSDNN
+    {
+        public Yolo5(string modelPath, int width, int height)
+            : base(modelPath)
+        {
+            this.InputH = height;
+            this.InputW = width;
+        }
+
+        public int InputW { private set; get; }
+
+        public int InputH { private set; get; }
+    }
+}

ZeroLevel.NN/Models/Cluster.cs

@@ -0,0 +1,133 @@
+namespace ZeroLevel.NN.Models
+{
+    public class Cluster<T>
+    {
+        private int _key;
+        private readonly List<T> _points = new List<T>();
+
+        public T this[int index] => _points[index];
+        public IReadOnlyList<T> Points => _points;
+        public int Key { get { return _key; } set { _key = value; } }
+        public Cluster()
+        {
+        }
+
+        public Cluster(T point)
+        {
+            _points.Add(point);
+        }
+
+        public Cluster(IEnumerable<T> points)
+        {
+            _points.AddRange(points);
+        }
+
+        public void Add(T point)
+        {
+            _points.Add(point);
+        }
+
+        public void Remove(T point)
+        {
+            _points.Remove(point);
+        }
+        /*
+        public bool IsNeighbor(T feature,
+            Func<T, float[]> embeddingFunction,
+            Func<float[], float[], double> similarityFunction,
+            float threshold,
+            float clusterThreshold)
+        {
+            if (_points.Count == 0) return true;
+            if (_points.Count == 1)
+            {
+                var similarity = similarityFunction(embeddingFunction(feature), embeddingFunction(_points[0]));
+                return similarity >= threshold;
+            }
+            var clusterNearestElementsCount = 0;
+            foreach (var f in _points)
+            {
+                var similarity = similarityFunction(embeddingFunction(feature), embeddingFunction(f));
+                if (similarity >= threshold)
+                {
+                    clusterNearestElementsCount++;
+                }
+            }
+            var clusterToFaceScore = (float)clusterNearestElementsCount / (float)_points.Count;
+            return clusterToFaceScore > clusterThreshold;
+        }
+        */
+        public bool IsNearest(T feature,
+            Func<T, T, double> distanceFunction,
+            double maxDistance)
+        {
+            if (_points.Count == 0) return true;
+            if (_points.Count == 1)
+            {
+                var distance = distanceFunction(feature, _points[0]);
+                return distance <= maxDistance;
+            }
+            foreach (var f in _points)
+            {
+                var distance = distanceFunction(feature, f);
+                if (distance > maxDistance)
+                {
+                    return false;
+                }
+            }
+            return true;
+        }
+
+        public double MinimalDistance(T feature,
+            Func<T, T, double> distanceFunction)
+        {
+            if (_points.Count == 0) return int.MaxValue;
+            var min = distanceFunction(feature, _points[0]);
+            if (_points.Count == 1)
+            {
+                return min;
+            }
+            for (int i = 0; i<_points.Count; i++)
+            {
+                var distance = distanceFunction(feature, _points[i]);
+                if (distance < min)
+                {
+                    min = distance;
+                }
+            }
+            return min;
+        }
+        /*
+        public bool IsNeighborCluster(Cluster<T> cluster,
+            Func<T, float[]> embeddingFunction,
+            Func<float[], float[], double> similarityFunction,
+            float threshold,
+            float clusterThreshold)
+        {
+            if (_points.Count == 0) return true;
+            if (_points.Count == 1 && cluster.IsNeighbor(_points[0], embeddingFunction, similarityFunction, threshold, clusterThreshold))
+            {
+                return true;
+            }
+            var clusterNearestElementsCount = 0;
+            foreach (var f in _points)
+            {
+                if (cluster.IsNeighbor(f, embeddingFunction, similarityFunction, threshold, clusterThreshold))
+                {
+                    clusterNearestElementsCount++;
+                }
+            }
+            var localCount = _points.Count;
+            var remoteCount = cluster._points.Count;
+            var localIntersection = (float)clusterNearestElementsCount / (float)localCount;
+            var remoteIntersection = (float)clusterNearestElementsCount / (float)remoteCount;
+            var score = Math.Max(localIntersection, remoteIntersection);
+            return score > clusterThreshold;
+        }
+        */
+        public void Merge(Cluster<T> other)
+        {
+            this._points.AddRange(other.Points);
+        }
+    }
+}

ZeroLevel.NN/Services/SSDNN.cs

@@ -11,9 +11,26 @@ namespace ZeroLevel.NN
     {
         private readonly InferenceSession _session;
 
-        public SSDNN(string path)
+        public SSDNN(string modelPath, bool gpu = false)
         {
-            _session = new InferenceSession(path);
+            if (gpu)
+            {
+                try
+                {
+                    var so = SessionOptions.MakeSessionOptionWithCudaProvider(0);
+                    so.GraphOptimizationLevel = GraphOptimizationLevel.ORT_ENABLE_ALL;
+                    _session = new InferenceSession(modelPath, so);
+                }
+                catch (Exception ex)
+                {
+                    Log.Error(ex, "Fault create InferenceSession with CUDA");
+                    _session = new InferenceSession(modelPath);
+                }
+            }
+            else
+            {
+                _session = new InferenceSession(modelPath);
+            }
         }
 
         protected void Extract(IDictionary<string, Tensor<float>> input, Action<IDictionary<string, Tensor<float>>> inputHandler)

ZeroLevel.NN/ZeroLevel.NN.csproj

@@ -3,14 +3,36 @@
   <PropertyGroup>
     <TargetFramework>net6.0</TargetFramework>
     <ImplicitUsings>enable</ImplicitUsings>
-    <Nullable>enable</Nullable>
+    <Nullable>disable</Nullable>
+    <AllowUnsafeBlocks>True</AllowUnsafeBlocks>
+    <DebugType>embedded</DebugType>
+    <ErrorReport>none</ErrorReport>
+    <Version>1.0.0.0</Version>
+    <Company>Ogoun</Company>
+    <Authors>Ogoun</Authors>
+    <Copyright>Copyright Ogoun 2022</Copyright>
+    <PackageIcon>zero.png</PackageIcon>
+    <PackageProjectUrl>https://github.com/ogoun/Zero/wiki</PackageProjectUrl>
+    <RepositoryUrl>https://github.com/ogoun/Zero</RepositoryUrl>
+    <RepositoryType>git</RepositoryType>
   </PropertyGroup>
 
+  <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|AnyCPU'">
+    <Optimize>False</Optimize>
+  </PropertyGroup>
+
+  <ItemGroup>
+    <None Include="..\zero.png">
+      <Pack>True</Pack>
+      <PackagePath>\</PackagePath>
+    </None>
+  </ItemGroup>
+
   <ItemGroup>
     <PackageReference Include="Aurigma.GraphicsMill.Core.x64" Version="10.5.308" />
     <PackageReference Include="Microsoft.ML.OnnxRuntime" Version="1.10.0" />
     <PackageReference Include="Microsoft.ML.OnnxRuntime.Managed" Version="1.10.0" />
-    <PackageReference Include="SixLabors.ImageSharp" Version="2.0.0" />
+    <PackageReference Include="SixLabors.ImageSharp" Version="2.1.0" />
   </ItemGroup>
 
   <ItemGroup>

ZeroLevel/ZeroLevel.csproj

@@ -6,21 +6,22 @@
 </Description>
     <Authors>ogoun</Authors>
     <Company>ogoun</Company>
-    <AssemblyVersion>3.3.6.1</AssemblyVersion>
-    <PackageReleaseNotes>New ConcurrentHashSet implementation</PackageReleaseNotes>
+    <AssemblyVersion>3.3.6.2</AssemblyVersion>
+    <PackageReleaseNotes>Update distance metrics</PackageReleaseNotes>
     <PackageProjectUrl>https://github.com/ogoun/Zero/wiki</PackageProjectUrl>
     <Copyright>Copyright Ogoun 2022</Copyright>
     <PackageLicenseUrl></PackageLicenseUrl>
     <PackageIconUrl></PackageIconUrl>
     <RepositoryUrl>https://github.com/ogoun/Zero</RepositoryUrl>
     <RepositoryType>git</RepositoryType>
-    <Version>3.3.6.1</Version>
-    <FileVersion>3.3.6.1</FileVersion>
+    <Version>3.3.6.2</Version>
+    <FileVersion>3.3.6.2</FileVersion>
     <Platforms>AnyCPU;x64;x86</Platforms>
     <PackageIcon>zero.png</PackageIcon>
-    <DebugType>full</DebugType>
+    <DebugType>none</DebugType>
     <ErrorReport>none</ErrorReport>
     <ApplicationIcon>zero.ico</ApplicationIcon>
+    <PlatformTarget>AnyCPU</PlatformTarget>
   </PropertyGroup>
 
   <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|AnyCPU'">